Hg_chrom2_TN10mRNA_2775
Organism: Heterodera glycines Gene Locus: chr2:2818770-2822212 Feature type: polypeptideProtein Sequence
Length: 399
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.982 | 0.729 | 0.864 | 1.671 | 1.157 | 0.418 | 1.253 | 2.005 | 1.219 | 1.709 | 1.474 | 0.905 | 0.482 | 0.87 | 0.895 | 0.616 | 0.646 | 0.578 | 0.663 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2643
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
cytoplasm
|
nucleus
|
KNKRKRRKKR
|
— | — | — | — |
1-20
|
0.873
|
0.899
|
1.000
|
1.000
|
0.329
|
0.101
|
0.015
|
0.389
|
0.197
|
0.334
|
0.306
|
0.014
|
0.321
|
0.196
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000780
|
1.000
|
5.000
|
Hsc_gene_20701.t1;Hsc_gene_21809.t1;Hsc_gene_21864.t1;Hsc_gene_21868.t1;Hsc_gene_3593.t1
|
Hsc_gene_21864.t1
|
— |
Q9LZV8.1 RING-H2 finger protein ATL74 [Arabidopsis thaliana]
|
XP_052136674.1 RING-H2 finger protein ATL74-like [Oryza glaberrima]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.876|GO:0005575_0.722|GO:0110165_0.722|GO:0003674_0.657|GO:0009987_0.646|GO:0016020_0.606|GO:0005622_0.571|GO:0065007_0.556|GO:0050789_0.545
|
IPR001841+317-357_317-358+|IPR013083+270-363+
|
SM00184+317-357+
|
PF13639+317-358+Ring_finger_domain
|
— |
PTHR46539+223-379+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
372-399
|
1.000
|
1-371
|
5d0m_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
46077.010
|
8.464
|
11.000
|
32.080
|
8.772
|
55.138
|
44.862
|
18.045
|
14.035
|
40.602
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
677.222
|
1.840
|
139.973
|
268.491
|
99.922
|
19.954
|
12.754
|
11.055
|
1992.503
|
1260.724
|
1574.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.022
|
7.055
|
1.049
|
-1.455
|
-2.310
|
— |
-0.960
|
— | — |
-2.752
|
-3.563
|
— | — |