Hg_chrom2_TN10mRNA_2778
Organism: Heterodera glycines Gene Locus: chr2:2864444-2867354 Feature type: polypeptideProtein Sequence
Length: 246
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.851 | 1.134 | 0.739 | 0.981 | 1.084 | 0.834 | 1.016 | 1.423 | 1.355 | 1.373 | 0.801 | 1.196 | 2.145 | 0.469 | 0.996 | 0.871 | 0.8 | 0.678 | 1.563 | 1.076 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2646
|
— | — |
0.889
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.561
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.244
|
0.531
|
0.006
|
0.481
|
0.262
|
0.126
|
0.188
|
0.010
|
0.139
|
0.328
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006460
|
2.000
|
0.000
|
0.000
|
— | — |
P34308.4 Calpain clp-1 [Caenorhabditis elegans]
|
XP_045097724.1 Protein CBR-CLP-1 [Caenorhabditis briggsae];CAP39484.2 Protein CBR-CLP-1 [Caenorhabditis briggsae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0005575_0.780|GO:0110165_0.775|GO:0008150_0.754|GO:0003674_0.657|GO:0009987_0.637|GO:0005622_0.623|GO:0005737_0.565|GO:0016020_0.564
|
IPR001300+1-202_1-220_9-197+|IPR022684+10-35_42-65_67-94+|IPR038765+6-148+|IPR050420+9-196+
|
SM00230+1-220+
|
PF00648+9-197+Calpain_family_cysteine_protease
|
— |
PTHR10183+9-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-246
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
27899.960
|
7.064
|
2.500
|
23.577
|
16.260
|
42.683
|
57.317
|
13.008
|
10.569
|
45.528
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
10.616
|
0.149
|
0.143
|
1.609
|
3.158
|
38.145
|
4.655
|
3.286
|
0.000
|
27.266
|
15.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
3.593
|
— |
3.616
|
-3.026
|
-3.634
|
— | — | — | — | — | — |
No JSON data available for plots.