SCN Proteipedia

Hg_chrom2_TN10mRNA_2780

Organism: Heterodera glycines Gene Locus: chr2:2884766-2886145 Feature type: polypeptide

Protein Sequence

Length: 221

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.842	1.158	0.823	2.028	0.98	1.624	0.916	0.679	0.603	1.406	1.44	2.396	0.754	0.609	1.57	1.034	0.445	0.548	0.0	0.665	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2648	—	—	1.444	1.000	1.000	1.000	2.000	2.000	1.000	2.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	30-pJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKGVGRPKR	—	—	—	—	—	—	0.000	—	—	0.912	0.064	0.034	0.355	0.025	0.011	0.015	0.010	0.015	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000527	6.000	1.000	Hsc_gene_21754.t1	Hsc_gene_21754.t1	—	—	KAF7637610.1 Nuclear receptor domain-containing protein, partial [Meloidogyne graminicola]	No	-0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.918\|GO:0005575_0.775\|GO:0110165_0.769\|GO:0003674_0.744\|GO:0005488_0.744\|GO:0065007_0.740\|GO:0050789_0.737\|GO:0005622_0.731\|GO:0009987_0.713\|GO:0050896_0.696\|GO:0032501_0.692\|GO:0050794_0.692\|GO:0043226_0.674\|GO:0043229_0.661\|GO:0032502_0.649\|GO:0048856_0.649\|GO:0097159_0.580\|GO:0008152_0.577\|GO:0009058_0.577\|GO:0009059_0.577\|GO:0043170_0.577\|GO:0044237_0.577\|GO:0044249_0.577\|GO:0010467_0.572\|GO:0003676_0.571\|GO:0044238_0.563\|GO:0007275_0.561\|GO:0019222_0.560\|GO:0031323_0.560\|GO:0060255_0.555\|GO:0080090_0.545\|GO:0016020_0.542\|GO:0009889_0.535\|GO:0006139_0.534\|GO:0051716_0.534\|GO:0010556_0.533\|GO:0031326_0.533\|GO:0034654_0.530\|GO:0090304_0.527\|GO:0016070_0.526\|GO:0141187_0.526\|GO:0010468_0.523\|GO:0032774_0.522\|GO:0003677_0.520\|GO:0043227_0.516\|GO:0043231_0.509	IPR001628+113-183_113-187_115-181_116-132_132-147_164-172_172-180+\|IPR013088+105-214+\|IPR050234+96-190+	SM00399+113-183+	PF00105+115-181+Zinc_finger,_C4_type_(two_domains)	—	PTHR24082+96-190+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-110	1.000	111-221	5uan_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.674	24736.640	9.526	16.500	28.959	6.335	50.226	49.774	18.552	10.407	47.059

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	29.539	1.235	15.909	76.227	17.919	6.035	5.158	3.022	88.494	15.799	46.954

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	3.463	5.815	2.371	-2.126	-1.554	—	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser