Hg_chrom2_TN10mRNA_2782
Organism: Heterodera glycines Gene Locus: chr2:2902431-2904272 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.922 | 1.283 | 1.003 | 0.119 | 0.632 | 1.326 | 0.903 | 0.862 | 1.226 | 1.258 | 0.679 | 1.217 | 1.628 | 1.393 | 0.915 | 0.837 | 0.904 | 0.888 | 1.592 | 1.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2650
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_9775
|
— |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
49-74
|
0.888
|
— | — | — | — |
0.000
|
— | — |
0.426
|
0.388
|
0.172
|
0.599
|
0.164
|
0.044
|
0.117
|
0.101
|
0.118
|
0.554
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001122
|
1.000
|
4.000
|
Hsc_gene_21742.t1;Hsc_gene_21742.t2;Hsc_gene_743.t1;Hsc_gene_9775.t1
|
Hsc_gene_21742.t1;Hsc_gene_21742.t2;Hsc_gene_9775.t1
|
— | — |
AVA09682.1 putative effector protein [Heterodera avenae]
|
MEQ4512122
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
PF13343+48-222+Bacterial_extracellular_solute-binding_protein
|
— |
PTHR30006+2-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-290
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
32455.940
|
6.980
|
1.500
|
20.000
|
13.793
|
42.069
|
57.931
|
10.690
|
9.310
|
51.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
1339.806
|
6.121
|
1909.589
|
1023.115
|
110.216
|
16.270
|
31.233
|
96.290
|
6187.119
|
23.997
|
2665.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.060
|
7.247
|
-0.795
|
-3.246
|
-2.745
|
0.953
|
2.480
|
-1.487
|
8.911
|
-2.409
|
— | — | — |
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