Hg_chrom2_TN10mRNA_2788
Organism: Heterodera glycines Gene Locus: chr2:2940266-2942048 Feature type: polypeptideProtein Sequence
Length: 497
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.585 | 0.983 | 1.244 | 1.041 | 0.905 | 1.135 | 0.79 | 1.509 | 1.073 | 1.305 | 0.854 | 1.42 | 1.23 | 1.006 | 1.232 | 0.632 | 0.924 | 1.128 | 1.238 | 1.184 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2656
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.841
|
0.481
|
0.052
|
0.561
|
0.149
|
0.088
|
0.046
|
0.009
|
0.158
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001681
|
3.000
|
1.000
|
Hsc_gene_12293.t1
|
Hsc_gene_12293.t1
|
— | — |
CAD2205146.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003676|GO:0003677|GO:0003887|GO:0006260
|
— |
IPR004868+23-200+|IPR006172+47-60_240-252_343-351+|IPR023211+1-73_287-412+|IPR043502+16-450+
|
— |
PF03175+23-200+DNA_polymerase_type_B,_organellar_and_viral
|
— |
PTHR33568+3-422+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-497
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
56823.080
|
6.993
|
4.500
|
26.962
|
13.078
|
45.674
|
54.326
|
14.688
|
12.274
|
48.491
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
skyblue
|
1.284
|
0.000
|
1.331
|
0.123
|
1.155
|
4.222
|
6.286
|
0.833
|
0.514
|
0.000
|
0.220
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.753
|
— | — | — | — | — |
-2.453
|
3.067
|
— | — | — | — | — |
No JSON data available for plots.