Hg_chrom2_TN10mRNA_2795
Organism: Heterodera glycines Gene Locus: chr2:2984213-2985434 Feature type: polypeptideProtein Sequence
Length: 166
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 2.522 | 0.986 | 0.415 | 0.904 | 0.927 | 0.717 | 0.904 | 0.669 | 0.895 | 1.004 | 1.063 | 1.339 | 1.506 | 0.861 | 1.463 | 0.988 | 0.913 | 0.0 | 0.354 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2663
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
36-58
|
0.980
|
1-18
|
0.969
|
0.799
|
0.000
|
0.000
|
0.152
|
0.127
|
0.413
|
0.086
|
0.139
|
0.055
|
0.093
|
0.089
|
0.197
|
0.776
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001796
|
1.000
|
3.000
|
Hsc_gene_21877.t1;Hsc_gene_24402.t1;Hsc_gene_24403.t1
|
— | — | — | — |
WP_042818481
|
0.700
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
57-166
|
1.000
|
1-56
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.959
|
18036.010
|
7.245
|
1.500
|
23.494
|
7.831
|
54.217
|
45.783
|
12.651
|
10.843
|
60.843
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
255.702
|
1.069
|
3.176
|
454.525
|
32.714
|
6.024
|
21.900
|
3.042
|
510.162
|
540.158
|
527.302
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.592
|
7.264
|
-3.833
|
-2.425
|
1.876
|
— |
2.993
|
— | — |
-3.706
|
— | — |