Hg_chrom2_TN10mRNA_2800
Organism: Heterodera glycines Gene Locus: chr2:3038628-3105613 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.26 | 1.061 | 0.718 | 0.625 | 0.748 | 1.141 | 2.292 | 1.019 | 1.07 | 0.947 | 1.225 | 1.505 | 0.721 | 1.531 | 0.536 | 0.888 | 1.01 | 1.282 | 0.245 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2668
|
— |
Hg_chrom2_TN10gene_2668
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
ENG-3|AF044210.1#op50jg19686.t1
|
— | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KRRR,RRSEPNVPSQTHRRKRFP
|
13-38
|
0.996
|
26-57
|
0.963
|
— | — |
0.000
|
— | — |
0.387
|
0.260
|
0.005
|
0.433
|
0.255
|
0.148
|
0.134
|
0.022
|
0.108
|
0.470
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003236
|
1.000
|
2.000
|
Hsc_gene_22060.t1;Hsc_gene_22060.t2
|
Hsc_gene_3965.t1;Hsc_gene_3965.t2;Hsc_gene_6098.t1
|
— | — |
MCR5381785.1 ankyrin repeat domain-containing protein [Lentisphaeria bacterium]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0003674_0.886|GO:0005488_0.761|GO:0008150_0.700|GO:0009987_0.626|GO:0008152_0.564|GO:0050896_0.548|GO:0065007_0.538|GO:0044238_0.532|GO:0044237_0.531|GO:0050789_0.529|GO:0009058_0.522|GO:0005575_0.517|GO:0110165_0.517|GO:0050794_0.512|GO:0032501_0.509|GO:0044249_0.501
|
IPR002110+90-119_90-122_124-154_124-157_129-216_158-187_158-190_191-220+|IPR036770+82-235_88-215+|IPR050842+90-164+
|
SM00248+90-119_124-154_158-187_191-220+
|
PF00023+90-119+Ankyrin_repeat|PF12796+129-216+Ankyrin_repeats_(3_copies)
|
— |
PTHR24173+90-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-94
|
1.000
|
95-240
|
9boi_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
26541.360
|
10.184
|
15.500
|
27.917
|
12.500
|
45.417
|
54.583
|
18.333
|
9.583
|
52.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1480.486
|
2535.558
|
1332.966
|
519.684
|
239.802
|
107.207
|
174.866
|
318.752
|
504.469
|
4137.960
|
2580.750
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.159
|
-2.424
|
-1.249
|
-1.147
|
-1.147
|
0.716
|
1.469
|
-0.725
|
-3.121
|
— |
-3.642
|
— | — |
No JSON data available for plots.