Hg_chrom2_TN10mRNA_2805
Organism: Heterodera glycines Gene Locus: chr2:3060419-3064333 Feature type: polypeptideProtein Sequence
Length: 370
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 1.634 | 1.376 | 1.305 | 0.901 | 0.901 | 0.386 | 1.216 | 1.982 | 1.059 | 0.942 | 1.272 | 1.051 | 0.78 | 0.993 | 0.811 | 1.374 | 0.819 | 0.416 | 0.954 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2673
|
Hg_chrom2_TN10gene_2673
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KSKKRKK,KKRKKADETVDERIEKLKR,KRKKADETVDERIEKLKRR,RKKADETVDERIEKLKRRL,KKADETVDERIEKLKRRLR
|
— | — | — | — |
1-20
|
0.968
|
1.000
|
0.000
|
0.000
|
0.698
|
0.043
|
0.004
|
0.305
|
0.019
|
0.180
|
0.135
|
0.066
|
0.085
|
0.235
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006657
|
1.000
|
1.000
|
Hsc_gene_21737.t1
|
Hsc_gene_21737.t1
|
— | — |
XP_058050960.1 E3 ubiquitin-protein ligase RNF26 [Ahaetulla prasina]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.738|GO:0003674_0.734|GO:0005575_0.723|GO:0110165_0.723|GO:0009987_0.669|GO:0005622_0.635|GO:0065007_0.631|GO:0003824_0.608|GO:0050789_0.608|GO:0050794_0.592|GO:0140096_0.549|GO:0016740_0.542|GO:0050896_0.532|GO:0016746_0.521|GO:0016755_0.517|GO:0019787_0.517|GO:0004842_0.515
|
IPR001841+314-358+|IPR013083+288-370+
|
— |
PF13920+312-363+Zinc_finger,_C3HC4_type_(RING_finger)
|
— |
PTHR22696+268-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
252-298
|
2.000
|
1-251;299-370
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
41999.890
|
6.046
|
-2.500
|
26.486
|
10.000
|
51.081
|
48.919
|
13.514
|
12.973
|
51.081
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |