Hg_chrom2_TN10mRNA_2809
Organism: Heterodera glycines Gene Locus: chr2:3113881-3115980 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.144 | 0.824 | 1.145 | 0.543 | 1.115 | 0.505 | 1.031 | 0.984 | 0.875 | 1.436 | 1.491 | 2.547 | 0.547 | 0.909 | 0.884 | 0.844 | 0.968 | 0.835 | 0.606 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2677
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.540
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
NDKRKKKK,KRMKALIGTLSEEKRRGF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.444
|
0.136
|
0.008
|
0.635
|
0.111
|
0.121
|
0.273
|
0.002
|
0.228
|
0.458
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003237
|
2.000
|
1.000
|
Hsc_gene_3964.t1
|
Hsc_gene_3964.t1;Hsc_gene_6098.t1;Hsc_gene_9765.t1
|
— | — |
MCX7036359.1 ankyrin repeat domain-containing protein [Pseudomonadota bacterium]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.758|GO:0009987_0.699|GO:0065007_0.619|GO:0050789_0.608|GO:0050794_0.589|GO:0005575_0.571|GO:0110165_0.571|GO:0048519_0.547|GO:0003674_0.543|GO:0048523_0.539|GO:0050896_0.522
|
IPR002110+85-113_85-114_88-114_130-159_136-223_164-194_198-229_198-230+|IPR036770+38-242_85-232+|IPR051631+82-232+
|
SM00248+85-114_130-159_164-194_198-229+
|
PF00023+88-114+Ankyrin_repeat|PF12796+136-223+Ankyrin_repeats_(3_copies)
|
— |
PTHR23206+82-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
221-254
|
1.000
|
1-220
|
7tbo_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
27541.810
|
8.473
|
5.500
|
29.134
|
6.299
|
46.457
|
53.543
|
16.142
|
12.992
|
51.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
black
|
236.896
|
86.377
|
112.586
|
174.600
|
491.247
|
301.162
|
393.752
|
183.208
|
1.205
|
381.916
|
218.754
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.878
|
0.746
|
1.461
|
-0.692
|
0.398
|
-0.826
|
1.249
|
-8.351
|
7.325
|
— | — | — |
No JSON data available for plots.