Hg_chrom2_TN10mRNA_2810
Organism: Heterodera glycines Gene Locus: chr2:3124925-3129099 Feature type: polypeptideProtein Sequence
Length: 576
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.626 | 1.534 | 1.01 | 1.078 | 1.215 | 1.024 | 0.744 | 0.955 | 1.698 | 0.798 | 1.315 | 0.919 | 1.447 | 0.568 | 0.921 | 0.818 | 0.968 | 0.763 | 0.668 | 1.736 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2678
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
PGEKRKA,EIKPKRKKMR
|
— | — | — | — |
1-26
|
0.950
|
0.629
|
0.000
|
0.000
|
0.283
|
0.109
|
0.102
|
0.173
|
0.081
|
0.041
|
0.127
|
0.016
|
0.166
|
0.821
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000089
|
1.000
|
15.000
|
Hsc_gene_16936.t1;Hsc_gene_16936.t2;Hsc_gene_16936.t3;Hsc_gene_16936.t4;Hsc_gene_16937.t1;Hsc_gene_16938.t1;Hsc_gene_17952.t1;Hsc_gene_17952.t2;Hsc_gene_17968.t1;Hsc_gene_18159.t1;Hsc_gene_9278.t1;Hsc_gene_9790.t1;Hsc_gene_9790.t2;Hsc_gene_9792.t1;Hsc_gene_9800.t1
|
— | — |
Q7JLI1.1 Zinc metalloproteinase nas-31 [Caenorhabditis elegans]
|
KAI1698134.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0018996
|
GO:0008150_0.785|GO:0005575_0.672|GO:0110165_0.668|GO:0003674_0.572|GO:0032501_0.523
|
IPR000742+428-439+|IPR001506+187-393_203-392_224-242_281-299_300-317_339-354_379-392+|IPR006026+200-344+|IPR017050+40-576+|IPR024079+134-393+|IPR034035+208-391+
|
SM00235+200-344+
|
PF01400+203-392+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+120-461+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-576
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
66237.090
|
7.618
|
7.500
|
27.951
|
13.889
|
50.174
|
49.826
|
15.104
|
12.847
|
46.528
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
412.054
|
13.704
|
94.425
|
51.086
|
6.711
|
6.281
|
1.320
|
6.057
|
2014.446
|
224.558
|
991.653
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.554
|
1.759
|
-0.779
|
-2.972
|
— |
-2.240
|
— |
-2.054
|
— |
-5.106
|
— | — | — |