Hg_chrom2_TN10mRNA_2811
Organism: Heterodera glycines Gene Locus: chr2:3142567-3144946 Feature type: polypeptideProtein Sequence
Length: 653
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 1.033 | 1.225 | 0.845 | 1.2 | 1.374 | 0.456 | 1.149 | 1.77 | 1.304 | 1.183 | 1.531 | 1.361 | 0.825 | 1.125 | 1.181 | 0.577 | 0.65 | 1.296 | 0.36 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKPR,KKAFPNLEFGGRDHFRRKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.794
|
0.204
|
0.055
|
0.278
|
0.159
|
0.161
|
0.104
|
0.020
|
0.053
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000781
|
3.000
|
3.000
|
Hsc_gene_3509.t1;Hsc_gene_8104.t1;Hsc_gene_8104.t2
|
Hsc_gene_20724.t1;Hsc_gene_20724.t2;Hsc_gene_3509.t1;Hsc_gene_8104.t1
|
— | — |
KAF7635668.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0046983
|
GO:0005575_0.676|GO:0110165_0.675|GO:0008150_0.674|GO:0005622_0.648|GO:0016020_0.605|GO:0043226_0.589|GO:0043229_0.586|GO:0043227_0.545|GO:0043231_0.519
|
IPR003656+1-50_2-44+|IPR008906+547-622+|IPR012337+145-624+|IPR036236+2-51+|IPR052035+2-624+
|
SM00614+2-46+
|
PF02892+2-44+BED_zinc_finger|PF05699+547-622+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+2-624+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-653
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
74838.890
|
6.875
|
3.500
|
29.556
|
10.107
|
51.149
|
48.851
|
15.620
|
13.936
|
43.798
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
76.144
|
79.282
|
44.775
|
60.174
|
43.822
|
45.032
|
16.220
|
34.246
|
76.643
|
154.316
|
121.028
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.053
|
-0.535
|
0.534
|
-0.491
|
— |
-1.466
|
— |
-0.942
|
— | — | — | — | — |
No JSON data available for plots.