Hg_chrom2_TN10mRNA_2814
Organism: Heterodera glycines Gene Locus: chr2:3163899-3170504 Feature type: polypeptideProtein Sequence
Length: 338
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.72 | 0.894 | 1.13 | 0.408 | 1.134 | 0.91 | 1.021 | 1.331 | 1.249 | 1.599 | 0.717 | 1.218 | 1.068 | 0.341 | 0.725 | 0.803 | 0.679 | 0.986 | 0.228 | 0.696 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2682
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.818
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-30
|
0.947
|
1.000
|
0.000
|
0.000
|
0.231
|
0.210
|
0.004
|
0.442
|
0.701
|
0.194
|
0.218
|
0.120
|
0.333
|
0.493
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001798
|
2.000
|
2.000
|
Hsc_gene_9777.t1;Hsc_gene_9779.t1
|
— | — |
Q18297.5 Transient receptor potential cation channel subfamily A member 1 homolog [Caenorhabditis elegans]
|
XP_046371140.2 ankyrin repeat domain-containing protein 50-like [Haliotis rufescens]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.859|GO:0009987_0.787|GO:0005575_0.722|GO:0110165_0.716|GO:0016020_0.630|GO:0071944_0.552|GO:0005886_0.535|GO:0003674_0.512|GO:0005622_0.511
|
IPR002110+21-104_40-70_75-104_75-107_108-137_108-140_113-206_141-171_175-204_175-207_208-237_208-240_211-236_242-272_242-275_248-330_276-305_276-308+|IPR036770+17-142_41-329_143-213_214-245_246-281_282-331+
|
SM00248+40-70_75-104_108-137_141-171_175-204_208-237_242-272_276-305+
|
PF00023+211-236+Ankyrin_repeat|PF12796+21-104_113-206_248-330+Ankyrin_repeats_(3_copies)
|
— |
PTHR24161+141-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-338
|
8p9e_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
36039.000
|
4.729
|
-11.500
|
23.964
|
9.172
|
41.124
|
58.876
|
10.947
|
13.018
|
52.663
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
395.235
|
395.745
|
246.132
|
240.278
|
197.736
|
179.650
|
95.567
|
399.366
|
47.103
|
1035.899
|
612.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.915
|
-0.857
|
— |
-0.311
|
— |
-0.902
|
1.045
|
-1.921
|
-4.570
|
— | — | — | — |