Hg_chrom2_TN10mRNA_2816
Organism: Heterodera glycines Gene Locus: chr2:3185025-3187487 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.587 | 1.006 | 0.656 | 0.166 | 1.162 | 1.479 | 0.773 | 1.562 | 0.908 | 1.137 | 1.129 | 1.131 | 1.135 | 1.017 | 2.159 | 0.893 | 1.616 | 0.583 | 1.479 | 0.141 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2684
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,RRKR,KKRPAVENKGKLKRE,PKKPPGKWTKRGRTRR,KKPPGKWTKRGRTRRQER,KKSENLKSMSNSGVEARRK
|
21-48
|
0.793
|
— | — | — | — |
0.000
|
— | — |
0.839
|
0.175
|
0.013
|
0.351
|
0.108
|
0.020
|
0.038
|
0.007
|
0.099
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001670
|
3.000
|
1.000
|
Hsc_gene_11836.t2
|
Hsc_gene_11835.t1;Hsc_gene_15310.t1;Hsc_gene_23065.t1;Hsc_gene_5153.t1;Hsc_gene_5153.t2
|
— | — |
KAI3421326.1 hypothetical protein GPALN_014945 [Globodera pallida]
|
MEB3294488
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-227
|
1.000
|
228-416
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
47869.430
|
11.298
|
37.500
|
31.731
|
9.615
|
57.933
|
42.067
|
21.154
|
10.577
|
45.192
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
177.115
|
10.253
|
18.139
|
15.376
|
18.735
|
27.922
|
9.847
|
20.318
|
31.490
|
706.039
|
416.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.496
|
— |
-0.905
|
-4.617
|
— |
-4.900
|
— | — |
No JSON data available for plots.