Hg_chrom2_TN10mRNA_2818
Organism: Heterodera glycines Gene Locus: chr2:3190291-3196131 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.678 | 0.936 | 1.22 | 0.463 | 1.119 | 1.033 | 1.039 | 1.342 | 1.119 | 1.542 | 0.763 | 0.987 | 1.025 | 0.323 | 0.753 | 0.671 | 0.66 | 1.119 | 0.258 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2686
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.229
|
0.223
|
0.004
|
0.438
|
0.606
|
0.182
|
0.154
|
0.069
|
0.383
|
0.513
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q21920.3 Ankyrin repeat and KH domain-containing protein mask-1 [Caenorhabditis elegans]
|
WP_067064496.1 ankyrin repeat domain-containing protein [Roseateles chitosanitabidus]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.707|GO:0008150_0.706|GO:0110165_0.699|GO:0009987_0.634|GO:0003674_0.617|GO:0005622_0.590|GO:0016020_0.516
|
IPR002110+10-40_10-74_45-74_45-77_46-61_78-107_78-110_83-171_94-108_111-135_111-141_145-170_145-174_168-200_202-232_202-235_208-290_236-265_236-268_269-298+|IPR036770+2-103_11-292_104-172_173-240_241-291+
|
SM00248+10-40_45-74_78-107_111-141_145-174_202-232_236-265_269-298+
|
PF12796+10-74_83-171_208-290+Ankyrin_repeats_(3_copies)
|
— |
PTHR24188+171-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-298
|
4zfh_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.737
|
31909.200
|
4.755
|
-10.000
|
24.832
|
9.396
|
41.611
|
58.389
|
11.409
|
13.423
|
53.020
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
red
|
51.873
|
105.480
|
15.964
|
24.041
|
61.898
|
39.785
|
80.756
|
40.437
|
4.997
|
85.062
|
50.749
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.965
|
-2.270
|
— |
1.334
|
-0.625
|
1.034
|
— |
1.144
|
-4.206
|
— | — | — | — |
No JSON data available for plots.