Hg_chrom2_TN10mRNA_2820
Organism: Heterodera glycines Gene Locus: chr2:3216222-3218378 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.54 | 0.19 | 0.841 | 0.29 | 1.072 | 0.415 | 1.568 | 2.4 | 1.695 | 0.634 | 1.64 | 2.42 | 0.469 | 0.498 | 1.444 | 0.914 | 0.897 | 1.072 | 1.127 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2688
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
10-42
|
0.737
|
— | — | — | — |
0.000
|
— | — |
0.218
|
0.129
|
0.011
|
0.064
|
0.305
|
0.136
|
0.235
|
0.068
|
0.812
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000149
|
1.000
|
12.000
|
Hsc_gene_14772.t1;Hsc_gene_14772.t2;Hsc_gene_15332.t1;Hsc_gene_16217.t1;Hsc_gene_21988.t1;Hsc_gene_21992.t1;Hsc_gene_21992.t2;Hsc_gene_25822.t1;Hsc_gene_25826.t1;Hsc_gene_5678.t1;Hsc_gene_9371.t1;Hsc_gene_9774.t1
|
Hsc_gene_9774.t1
|
— | — |
KAI3410984.1 Serpentine type 7TM GPCR chemoreceptor Srsx [Globodera pallida]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+4-253+|IPR017452+1-239+|IPR019424+5-251+|IPR047130+3-270+
|
SM01381+4-253+
|
PF10320+5-251+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+3-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
32581.500
|
9.623
|
15.500
|
12.544
|
17.073
|
39.024
|
60.976
|
9.756
|
2.787
|
44.251
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
53.716
|
1.163
|
4.072
|
4.514
|
2.667
|
4.269
|
3.042
|
0.827
|
7.070
|
221.997
|
129.886
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.826
|
— | — | — | — |
-2.473
|
2.019
|
-5.066
|
— |
-5.858
|
— | — |
No JSON data available for plots.