Hg_chrom2_TN10mRNA_2825
Organism: Heterodera glycines Gene Locus: chr2:3249339-3252616 Feature type: polypeptideProtein Sequence
Length: 401
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 2.03 | 0.725 | 0.774 | 0.831 | 1.343 | 0.742 | 1.122 | 1.33 | 1.348 | 1.436 | 1.907 | 1.593 | 0.575 | 0.814 | 0.891 | 0.777 | 0.793 | 0.767 | 0.367 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2693
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KRRRRRKKRG,KKAKDGEKQQKNKKD
|
— | — | — | — |
1-16
|
0.991
|
1.000
|
1.000
|
1.000
|
0.438
|
0.199
|
0.095
|
0.460
|
0.499
|
0.119
|
0.280
|
0.118
|
0.348
|
0.271
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003238
|
2.000
|
1.000
|
Hsc_gene_21797.t1
|
Hsc_gene_21797.t1
|
— |
P0C041.2 Putative RING-H2 finger protein ATL53 [Arabidopsis thaliana]
|
XP_047058342.1 RING-H2 finger protein ATL39-like [Lolium rigidum]
|
KAK4342901
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.922|GO:0003674_0.766|GO:0005575_0.660|GO:0110165_0.656|GO:0016020_0.595|GO:0003824_0.593|GO:0008152_0.581|GO:0016740_0.572|GO:0140096_0.572|GO:0009987_0.566|GO:0016746_0.561|GO:0016755_0.559|GO:0019787_0.559|GO:0043170_0.558|GO:0004842_0.557|GO:0044238_0.548|GO:0050896_0.534|GO:0019538_0.518
|
IPR001841+330-376_331-375_331-376+|IPR013083+287-380+
|
SM00184+331-375+
|
PF13639+330-376+Ring_finger_domain
|
— |
PTHR45676+240-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
172-224
|
2.000
|
1-171;225-401
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
45171.240
|
10.057
|
22.500
|
24.688
|
10.224
|
49.626
|
50.374
|
15.711
|
8.978
|
46.883
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
384.041
|
0.149
|
24.336
|
26.665
|
5.590
|
0.245
|
1.823
|
3.862
|
349.897
|
1394.255
|
946.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.086
|
7.310
|
— |
-2.301
|
-4.472
|
— |
3.852
|
— | — |
-3.553
|
-4.581
|
— | — |