Hg_chrom2_TN10mRNA_2836
Organism: Heterodera glycines Gene Locus: chr2:3330905-3334140 Feature type: polypeptideProtein Sequence
Length: 255
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.14 | 0.912 | 1.141 | 0.406 | 1.111 | 0.503 | 1.027 | 0.784 | 0.871 | 1.431 | 1.604 | 2.307 | 0.545 | 0.98 | 0.88 | 0.784 | 0.9 | 0.832 | 0.905 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2704
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.889
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
GPSNDKRKKKKK,KRMKALIGTLSEEKRRGF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.143
|
0.008
|
0.643
|
0.162
|
0.138
|
0.353
|
0.002
|
0.219
|
0.433
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003237
|
2.000
|
1.000
|
Hsc_gene_3964.t1
|
Hsc_gene_3964.t1;Hsc_gene_3965.t1;Hsc_gene_3965.t2;Hsc_gene_6098.t1;Hsc_gene_9765.t1
|
— | — |
MCX7036359.1 ankyrin repeat domain-containing protein [Pseudomonadota bacterium]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.746|GO:0009987_0.691|GO:0065007_0.597|GO:0050789_0.586|GO:0005575_0.573|GO:0110165_0.573|GO:0050794_0.572|GO:0003674_0.549|GO:0048519_0.535|GO:0048523_0.527|GO:0050896_0.510
|
IPR002110+85-113_85-114_88-114_130-159_136-223_164-194_198-229+|IPR036770+38-242_85-232+|IPR051631+82-232+
|
SM00248+85-114_130-159_164-194_198-229+
|
PF00023+88-114+Ankyrin_repeat|PF12796+136-223+Ankyrin_repeats_(3_copies)
|
— |
PTHR23206+82-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
227-255
|
1.000
|
1-226
|
7tbo_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
27799.110
|
9.279
|
7.000
|
29.412
|
6.667
|
46.275
|
53.725
|
16.471
|
12.941
|
51.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
299.192
|
265.677
|
284.143
|
255.646
|
697.837
|
473.455
|
673.062
|
229.558
|
2.056
|
227.655
|
130.970
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.193
|
— |
1.417
|
-0.545
|
0.519
|
-1.156
|
1.698
|
-6.810
|
7.057
|
— | — | — |
No JSON data available for plots.