Hg_chrom2_TN10mRNA_2841
Organism: Heterodera glycines Gene Locus: chr2:3359311-3369668 Feature type: polypeptideProtein Sequence
Length: 785
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.83 | 1.274 | 1.089 | 0.527 | 1.04 | 1.797 | 0.743 | 0.828 | 1.387 | 1.257 | 1.042 | 1.199 | 1.38 | 0.49 | 1.04 | 0.946 | 0.919 | 1.004 | 0.49 | 0.637 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2709
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.562
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.226
|
0.075
|
0.018
|
0.529
|
0.132
|
0.457
|
0.415
|
0.015
|
0.215
|
0.292
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003241
|
1.000
|
2.000
|
Hsc_gene_672.t2;Hsc_gene_672.t3
|
Hsc_gene_672.t1;Hsc_gene_672.t3
|
— | — |
KAI1727891.1 exo70 exocyst complex subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000145|GO:0005546|GO:0006887
|
GO:0008150_0.951|GO:0005575_0.919|GO:0110165_0.919|GO:0009987_0.898|GO:0016020_0.783|GO:0065007_0.664|GO:0050789_0.649|GO:0071944_0.647|GO:0005622_0.644|GO:0050794_0.631|GO:0005886_0.630|GO:0071840_0.613|GO:0043226_0.608|GO:0005737_0.565|GO:0043229_0.540|GO:0016043_0.534|GO:0032502_0.527|GO:0048856_0.527
|
IPR004140+108-781+|IPR016159+96-781+|IPR046364+412-779+|IPR048320+42-144+
|
— |
PF03081+412-779+Exo70_exocyst_complex_subunit_C-terminal|PF04136+42-144+Conserved_oligomeric_Golgi_complex_subunit_3,_N-terminal
|
— |
PTHR12542+108-781+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;239-366
|
2.000
|
7-238;367-785
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
88096.240
|
7.087
|
4.500
|
25.860
|
9.427
|
50.573
|
49.427
|
13.631
|
12.229
|
47.771
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1376.586
|
455.882
|
1191.032
|
873.062
|
691.596
|
696.248
|
911.597
|
842.565
|
3400.711
|
1348.787
|
2228.183
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.156
|
0.800
|
-0.339
|
-0.368
|
— |
0.398
|
— |
0.256
|
— |
-1.800
|
— | — | — |
No JSON data available for plots.