Hg_chrom2_TN10mRNA_2843
Organism: Heterodera glycines Gene Locus: chr2:3386586-3400713 Feature type: polypeptideProtein Sequence
Length: 1,386
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.763 | 1.208 | 1.049 | 0.821 | 0.866 | 1.277 | 0.799 | 2.742 | 1.186 | 1.531 | 0.514 | 1.146 | 1.323 | 0.999 | 1.428 | 0.948 | 0.863 | 0.558 | 0.777 | 0.637 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2711
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
PKPS,RRKR,RRRK
|
— | — | — | — |
1-25
|
0.967
|
1.000
|
0.000
|
0.000
|
0.210
|
0.195
|
0.043
|
0.205
|
0.089
|
0.065
|
0.088
|
0.030
|
0.354
|
0.799
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006666
|
1.000
|
1.000
|
Hsc_gene_674.t1
|
Hsc_gene_674.t1
|
— |
G5EG78.1 Peroxidasin homolog pxn-2 [Caenorhabditis elegans]
|
KAI1709838.1 heme peroxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0005515|GO:0006979|GO:0020037
|
GO:0008150_0.890|GO:0009987_0.837|GO:0005575_0.768|GO:0110165_0.763|GO:0003674_0.677|GO:0050896_0.616|GO:0003824_0.547|GO:0051716_0.528
|
IPR001611+72-132_97-120_121-142_146-167_146-204+|IPR003591+95-118_119-142_145-167_168-191+|IPR003598+463-528_557-623+|IPR003599+457-540_551-634+|IPR007110+282-363_451-538_545-634+|IPR010255+761-1347+|IPR013098+451-534_545-633+|IPR013783+447-536_537-640+|IPR019791+755-1349_767-1321_791-802_843-858_1002-1020_1020-1040_1045-1071_1099-1109_1226-1246_1297-1311+|IPR032675+30-141_142-273+|IPR034824+889-1336+|IPR036179+451-547_543-630+|IPR037120+746-1348+|IPR050702+608-1346+
|
SM00369+95-118_119-142_145-167_168-191+|SM00408+463-528_557-623+|SM00409+457-540_551-634+
|
PF03098+767-1321+Animal_haem_peroxidase|PF07679+451-534_545-633+Immunoglobulin_I-set_domain|PF13855+72-132_146-204+Leucine_rich_repeat
|
G3DSA:1.10.640.10:FF:000001+745-1349+Peroxidasin_homolog|G3DSA:2.60.40.10:FF:000032+448-537+palladin_isoform_X1|G3DSA:2.60.40.10:FF:000299+542-634+protogenin_isoform_X2
|
PTHR11475+608-1346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
390-456
|
2.000
|
1-389;457-1386
|
9gen_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
156690.560
|
7.303
|
30.000
|
26.840
|
13.420
|
48.918
|
51.082
|
15.873
|
10.967
|
47.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
1105.557
|
930.589
|
842.777
|
782.853
|
990.125
|
1716.830
|
893.101
|
1388.939
|
61.633
|
1961.133
|
1147.062
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.372
|
-0.387
|
— |
0.306
|
0.810
|
-0.934
|
-0.416
|
-0.494
|
-5.118
|
— | — | — | — |