Hg_chrom2_TN10mRNA_2847
Organism: Heterodera glycines Gene Locus: chr2:3433636-3438583 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 1.282 | 0.787 | 0.95 | 1.05 | 1.716 | 0.469 | 1.378 | 1.4 | 1.436 | 0.716 | 1.969 | 1.75 | 0.681 | 1.085 | 0.703 | 0.774 | 0.805 | 0.909 | 1.737 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2715
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.677
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
4-64
|
0.939
|
— | — | — | — |
0.000
|
— | — |
0.101
|
0.053
|
0.020
|
0.164
|
0.237
|
0.160
|
0.278
|
0.006
|
0.851
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006667
|
1.000
|
1.000
|
Hsc_gene_9152.t1
|
Hsc_gene_9152.t1;Hsc_gene_9152.t2
|
— |
Q19038.1 Degenerin del-1 [Caenorhabditis elegans]
|
KAI1706855.1 amiloride-sensitive sodium channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005272|GO:0006814|GO:0016020
|
GO:0008150_0.962|GO:0050896_0.817|GO:0042221_0.736|GO:0005575_0.630|GO:0110165_0.627|GO:0016020_0.580|GO:0009987_0.572|GO:0071944_0.558|GO:0005886_0.549|GO:0003674_0.532
|
IPR001873+29-438_29-447_82-98_388-408_408-422_422-438+
|
— |
PF00858+29-438+Amiloride-sensitive_sodium_channel
|
— |
PTHR11690+29-447+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
59733.770
|
6.963
|
4.000
|
23.425
|
16.142
|
45.276
|
54.724
|
12.795
|
10.630
|
40.551
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
170.056
|
21.752
|
94.227
|
98.233
|
84.983
|
57.277
|
42.699
|
155.276
|
27.434
|
515.500
|
306.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.889
|
2.041
|
— | — |
-0.554
|
— |
1.340
|
-1.729
|
-4.366
|
— | — | — | — |
No JSON data available for plots.