Hg_chrom2_TN10mRNA_2848
Organism: Heterodera glycines Gene Locus: chr2:3444759-3446339 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 1.309 | 0.837 | 0.882 | 1.364 | 0.984 | 0.365 | 1.662 | 1.478 | 1.417 | 1.24 | 1.655 | 1.137 | 0.639 | 0.887 | 1.023 | 0.587 | 1.046 | 1.18 | 0.827 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2716
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— |
KKVDQGRTIMYTSLKRRFF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.640
|
0.164
|
0.056
|
0.449
|
0.181
|
0.243
|
0.138
|
0.135
|
0.079
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001801
|
3.000
|
1.000
|
Hsc_gene_9221.t3
|
— | — |
O75132.2 Zinc finger BED domain-containing protein 4 [Homo sapiens]
|
KAI1695796.1 zinc finger BED domain-containing protein 1 [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.890|GO:0110165_0.888|GO:0005622_0.847|GO:0003674_0.845|GO:0016020_0.798|GO:0005737_0.794|GO:0005488_0.786|GO:0043226_0.777|GO:0043229_0.770|GO:0005515_0.754|GO:0043227_0.738|GO:0043231_0.720|GO:0042802_0.673|GO:0005634_0.628|GO:0031974_0.580|GO:0043233_0.580|GO:0070013_0.580|GO:0031981_0.575|GO:0005654_0.563
|
IPR012337+29-304+|IPR052035+9-316+
|
— | — | — |
PTHR46481+9-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
44912.880
|
7.263
|
5.500
|
28.645
|
11.765
|
48.849
|
51.151
|
15.857
|
12.788
|
43.734
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
13.039
|
10.121
|
10.064
|
6.277
|
4.802
|
7.377
|
1.835
|
5.815
|
3.237
|
37.258
|
22.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.995
|
— | — | — | — | — | — | — |
No JSON data available for plots.