Hg_chrom2_TN10mRNA_2856
Organism: Heterodera glycines Gene Locus: chr2:3538892-3541311 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.535 | 1.725 | 0.651 | 0.441 | 1.321 | 1.115 | 0.7 | 1.407 | 1.194 | 1.175 | 1.434 | 2.407 | 0.71 | 0.639 | 1.67 | 0.986 | 0.88 | 0.62 | 0.393 | 1.053 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2724
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.408
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRIATLMKSYTNKERRI,RRMNGQIPKDFKSILKKYR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.694
|
0.227
|
0.063
|
0.257
|
0.066
|
0.059
|
0.085
|
0.020
|
0.155
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000293
|
2.000
|
7.000
|
Hsc_gene_16940.t1;Hsc_gene_21508.t1;Hsc_gene_21508.t2;Hsc_gene_21782.t1;Hsc_gene_21787.t1;Hsc_gene_9186.t1;Hsc_gene_9186.t2
|
Hsc_gene_9186.t1
|
— | — |
CAK5082890.1 unnamed protein product [Meloidogyne enterolobii]
|
WP_080934464
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-107;322-391
|
1.000
|
108-321
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
45249.830
|
10.317
|
29.500
|
31.969
|
9.463
|
56.010
|
43.990
|
20.460
|
11.509
|
42.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkmagenta
|
218.808
|
15.311
|
29.104
|
9.928
|
11.056
|
6.141
|
16.398
|
7.560
|
107.075
|
841.167
|
526.556
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
-0.761
|
-1.443
|
— | — |
1.419
|
— |
1.253
|
— | — |
-6.001
|
— | — |
No JSON data available for plots.