SCN Proteipedia

Hg_chrom2_TN10mRNA_2857

Organism: Heterodera glycines Gene Locus: chr2:3551483-3561710 Feature type: polypeptide

Protein Sequence

Length: 533

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.894	1.047	0.989	0.518	0.938	1.347	0.893	1.689	1.292	1.268	0.54	1.655	0.73	1.227	1.685	0.831	0.953	0.881	0.722	0.552	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2725	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	30-Not_Clustered	0.830

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KKVPLGHTNSRHRQR	—	—	—	—	—	—	0.000	—	—	0.407	0.117	0.026	0.760	0.150	0.358	0.179	0.021	0.300	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001802	1.000	3.000	Hsc_gene_9185.t1;Hsc_gene_9185.t2;Hsc_gene_9185.t3	Hsc_gene_9185.t1;Hsc_gene_9185.t2;Hsc_gene_9185.t3	—	Q61084.1 Mitogen-activated protein kinase kinase kinase 3 [Mus musculus]	KAH7703906.1 STE/STE11/MEKK2 protein kinase [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.957\|GO:0009987_0.836\|GO:0005575_0.815\|GO:0110165_0.815\|GO:0005622_0.737\|GO:0065007_0.708\|GO:0050789_0.701\|GO:0003674_0.691\|GO:0003824_0.691\|GO:0016740_0.691\|GO:0050794_0.686\|GO:0140096_0.686\|GO:0016772_0.677\|GO:0016773_0.664\|GO:0050896_0.662\|GO:0004672_0.660\|GO:0016301_0.660\|GO:0051716_0.603\|GO:0007154_0.588\|GO:0023052_0.580\|GO:0007165_0.574\|GO:0004674_0.519\|GO:0005737_0.518	IPR000719+269-531_271-529+\|IPR011009+269-532+\|IPR017441+275-299+\|IPR050538+227-529+	SM00220+269-531+	PF00069+271-529+Protein_kinase_domain	—	PTHR48016+227-529+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-62;137-270	2.000	63-136;271-533	9p6a_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.796	59318.570	8.319	13.000	26.266	8.818	47.655	52.345	15.197	11.069	50.469

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	turquoise	442.184	298.004	506.308	511.399	475.081	429.532	347.004	325.670	233.658	674.436	485.531

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.536	0.642	—	-0.138	—	-0.299	-0.505	0.234	—	—	—	—	—

No JSON data available for plots.

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