SCN Proteipedia

Hg_chrom2_TN10mRNA_2858

Organism: Heterodera glycines Gene Locus: chr2:3581244-3585000 Feature type: polypeptide

Protein Sequence

Length: 222

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.367	0.733	0.983	0.155	0.751	0.347	1.341	1.802	0.3	0.304	0.819	1.06	0.876	0.866	3.769	2.252	0.591	1.024	0.0	1.192	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2726	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Not_Clustered	0.691

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RREISPKRGRARSRSRSR,RKSFSRSPARNNRSRTRSRSRSKSRSVSR	59-97	0.972	—	—	—	—	0.000	—	—	0.926	0.040	0.018	0.133	0.050	0.018	0.021	0.002	0.076	0.097

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001803	2.000	2.000	Hsc_gene_26373.t2;Hsc_gene_9190.t1	Hsc_gene_26373.t1;Hsc_gene_26373.t2;Hsc_gene_9190.t1	—	Q13595.1 Transformer-2 protein homolog alpha [Homo sapiens]	KAI3421179.1 transformer 2 beta [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0008150_0.851\|GO:0005575_0.845\|GO:0110165_0.838\|GO:0005622_0.779\|GO:0043226_0.729\|GO:0043229_0.729\|GO:0016020_0.707\|GO:0043227_0.662\|GO:0043231_0.662\|GO:0008152_0.647\|GO:0043170_0.647\|GO:0009987_0.631\|GO:0044238_0.619\|GO:0003674_0.607\|GO:0009058_0.576\|GO:0044237_0.567\|GO:0044249_0.567\|GO:0009059_0.563\|GO:0010467_0.563\|GO:0065007_0.557\|GO:0006139_0.553\|GO:0005488_0.551\|GO:0090304_0.549\|GO:0050789_0.544\|GO:0005634_0.543\|GO:0016070_0.543	IPR000504+106-184_107-180_114-177+\|IPR012677+91-221+\|IPR035979+63-182+\|IPR050441+51-216+	SM00360+107-180+	PF00076+114-177+RNA_recognition_motif	—	PTHR48034+51-216+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-121;184-222	1.000	122-183	2rra_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.598	25182.850	11.945	35.000	37.387	10.811	61.261	38.739	27.477	9.910	54.054

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	999.567	1166.790	1606.273	1594.503	1603.118	1221.547	870.377	826.128	384.155	751.712	594.188

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.231	0.314	—	—	-0.377	-0.480	-0.671	—	—	2.229	—	—	—

No JSON data available for plots.

Back to Browser