Hg_chrom2_TN10mRNA_2861
Organism: Heterodera glycines Gene Locus: chr2:3595698-3600271 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 0.754 | 1.032 | 0.652 | 0.766 | 0.624 | 0.74 | 1.757 | 1.802 | 1.278 | 0.901 | 0.795 | 1.727 | 0.832 | 1.158 | 0.927 | 0.532 | 0.778 | 1.247 | 1.987 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2729
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.939
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
3-23
|
0.993
|
— | — | — | — |
0.001
|
— | — |
0.120
|
0.077
|
0.042
|
0.163
|
0.482
|
0.273
|
0.704
|
0.060
|
0.103
|
0.294
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006674
|
1.000
|
1.000
|
Hsc_gene_9193.t1
|
Hsc_gene_9193.t1
|
— |
Q18515.2 Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Caenorhabditis elegans]
|
KIH58512.1 Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 family protein [Ancylostoma duodenale]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.893|GO:0009987_0.783|GO:0003674_0.743|GO:0008152_0.730|GO:0044238_0.699|GO:0044237_0.693|GO:0009058_0.682|GO:0044249_0.657|GO:0043170_0.652|GO:0003824_0.645|GO:1901135_0.645|GO:0019538_0.643|GO:0009059_0.633|GO:1901137_0.614|GO:0009100_0.601|GO:0009101_0.598|GO:0016740_0.545|GO:0005575_0.507|GO:0110165_0.507
|
IPR003378+55-228+|IPR026050+44-306+
|
— |
PF02434+55-228+Fringe-like
|
— |
PTHR23033+44-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
370-370
|
1.000
|
1-369
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
42534.980
|
8.499
|
11.500
|
25.405
|
18.108
|
40.811
|
59.189
|
15.135
|
10.270
|
44.324
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
17.445
|
3.668
|
4.167
|
6.361
|
8.666
|
9.319
|
15.183
|
0.547
|
0.514
|
57.971
|
33.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
-4.196
|
4.926
|
— | — | — | — | — |
No JSON data available for plots.