Hg_chrom2_TN10mRNA_2863
Organism: Heterodera glycines Gene Locus: chr2:3603070-3611875 Feature type: polypeptideProtein Sequence
Length: 315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.554 | 1.403 | 1.328 | 0.219 | 0.847 | 1.384 | 0.529 | 2.222 | 2.187 | 0.901 | 0.818 | 0.934 | 1.146 | 0.733 | 0.907 | 1.088 | 1.457 | 0.866 | 0.977 | 0.747 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2731
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.666
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.077
|
— | — |
0.088
|
0.168
|
0.002
|
0.176
|
0.590
|
0.215
|
0.845
|
0.008
|
0.203
|
0.488
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000775
|
2.000
|
4.000
|
Hsc_gene_5167.t1;Hsc_gene_9195.t1;Hsc_gene_9196.t2;Hsc_gene_9257.t2
|
Hsc_gene_9195.t1
|
— | — |
WP_052354369.1 class I SAM-dependent methyltransferase [Neochlamydia sp. S13];BBI18100.1 Methyltransferase type 11 [Neochlamydia sp. S13]
|
MBA3966162
|
0.540
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008757
|
GO:0005575_0.888|GO:0110165_0.883|GO:0005622_0.815|GO:0016020_0.804|GO:0005737_0.762|GO:0071944_0.708|GO:0005886_0.691|GO:0005829_0.595
|
IPR013216+160-237+|IPR029063+127-304_141-300+
|
— |
PF08241+160-237+Methyltransferase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-120
|
2.000
|
1-35;121-315
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
35808.260
|
6.384
|
-1.000
|
26.667
|
12.381
|
54.603
|
45.397
|
14.286
|
12.381
|
49.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
186.069
|
174.812
|
86.374
|
12.559
|
11.316
|
50.340
|
15.422
|
138.765
|
5.139
|
626.601
|
360.260
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.250
|
-3.939
|
-2.674
|
— |
2.171
|
-1.696
|
1.357
|
-3.025
|
-7.024
|
— |
-5.436
|
— | — |
No JSON data available for plots.