Hg_chrom2_TN10mRNA_2864
Organism: Heterodera glycines Gene Locus: chr2:3628539-3634100 Feature type: polypeptideProtein Sequence
Length: 581
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 1.041 | 0.908 | 0.712 | 0.746 | 0.927 | 0.451 | 1.549 | 1.492 | 1.465 | 1.017 | 1.417 | 1.96 | 0.927 | 1.335 | 0.811 | 0.79 | 0.991 | 0.794 | 1.215 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2732
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRTLFVKRKGGCFARKLRF
|
45-71
|
0.930
|
— | — | — | — |
0.000
|
— | — |
0.140
|
0.062
|
0.006
|
0.182
|
0.565
|
0.186
|
0.822
|
0.037
|
0.145
|
0.375
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001068
|
2.000
|
3.000
|
Hsc_gene_4441.t1;Hsc_gene_9196.t1;Hsc_gene_9196.t3
|
Hsc_gene_9196.t1;Hsc_gene_9196.t3
|
— |
Q20593.1 Glycosyltransferase family 92 protein F49C12.5 [Caenorhabditis elegans]
|
KAI1707106.1 glycosyltransferase family 92 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008166+237-452+|IPR052012+227-576+
|
— |
PF01697+237-452+Glycosyltransferase_family_92
|
— |
PTHR21645+227-576+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-581
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
67461.660
|
9.698
|
31.000
|
25.818
|
15.318
|
44.406
|
55.594
|
16.351
|
9.466
|
43.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
98.106
|
30.096
|
13.290
|
12.724
|
11.208
|
15.825
|
43.568
|
7.879
|
2.296
|
377.020
|
216.424
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.409
|
-1.379
|
— | — | — |
1.467
|
-1.118
|
2.609
|
-7.238
|
— |
-4.619
|
— | — |
No JSON data available for plots.