Hg_chrom2_TN10mRNA_2865
Organism: Heterodera glycines Gene Locus: chr2:3636187-3640648 Feature type: polypeptideProtein Sequence
Length: 578
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 1.288 | 0.944 | 0.537 | 0.923 | 1.242 | 0.515 | 1.99 | 1.692 | 1.169 | 0.891 | 1.221 | 1.586 | 0.732 | 0.883 | 0.791 | 0.908 | 0.996 | 1.464 | 1.17 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2733
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.946
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.108
|
0.047
|
0.005
|
0.187
|
0.278
|
0.207
|
0.860
|
0.021
|
0.141
|
0.575
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001125
|
2.000
|
3.000
|
Hsc_gene_9197.t1;Hsc_gene_9199.t1;Hsc_gene_9199.t2
|
Hsc_gene_4697.t1;Hsc_gene_9197.t1;Hsc_gene_9199.t1;Hsc_gene_9199.t2
|
— |
Q19417.2 Glycosyltransferase family 92 protein F13G3.3 [Caenorhabditis elegans]
|
XP_024499557.1 Domain of unknown function DUF23 domain-containing protein [Strongyloides ratti];CEF60348.1 Domain of unknown function DUF23 domain-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008166+208-426+|IPR052012+95-576+
|
— |
PF01697+208-426+Glycosyltransferase_family_92
|
— |
PTHR21645+95-576+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-578
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
66464.130
|
7.207
|
8.500
|
24.913
|
15.571
|
46.367
|
53.633
|
14.187
|
10.727
|
45.502
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
310.160
|
35.120
|
25.065
|
5.144
|
2.498
|
5.009
|
7.296
|
3.039
|
0.000
|
1325.761
|
757.577
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.717
|
-2.910
|
-2.178
|
— | — | — | — | — |
-11.178
|
— |
-8.520
|
— | — |
No JSON data available for plots.