Hg_chrom2_TN10mRNA_2874
Organism: Heterodera glycines Gene Locus: chr2:3705715-3708652 Feature type: polypeptideProtein Sequence
Length: 468
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.571 | 1.491 | 0.505 | 1.179 | 0.748 | 0.712 | 0.967 | 0.962 | 1.709 | 1.242 | 1.489 | 1.885 | 2.077 | 0.822 | 0.698 | 1.068 | 0.701 | 0.68 | 0.986 | 0.754 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2740
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KKEVLGLFDLALIKMDKK
|
— | — |
23-50
|
0.979
|
1-18
|
0.938
|
1.000
|
0.000
|
0.000
|
0.224
|
0.298
|
0.095
|
0.421
|
0.151
|
0.118
|
0.235
|
0.054
|
0.242
|
0.789
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006677
|
1.000
|
1.000
|
Hsc_gene_9182.t1
|
— | — |
P56677.2 Suppressor of tumorigenicity 14 protein homolog [Mus musculus]
|
XP_065258940.1 serine protease 27-like [Emys orbicularis]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0005575_0.800|GO:0110165_0.793|GO:0008150_0.783|GO:0003674_0.519
|
IPR001254+218-458_219-453_219-463+|IPR001314+252-267_321-335_409-421+|IPR009003+217-454+|IPR033116+410-421+|IPR043504+211-462+|IPR051333+197-463+
|
SM00020+218-458+
|
PF00089+219-453+Trypsin
|
— |
PTHR24260+197-463+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
52624.700
|
9.992
|
32.500
|
22.436
|
13.248
|
43.376
|
56.624
|
15.171
|
7.265
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
31.779
|
1.395
|
7.206
|
1.993
|
4.034
|
68.255
|
38.527
|
77.476
|
0.000
|
64.452
|
36.830
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.140
|
— |
-1.737
|
— |
4.112
|
-0.819
|
— |
-0.866
|
— | — | — | — | — |