Hg_chrom2_TN10mRNA_2877
Organism: Heterodera glycines Gene Locus: chr2:3727343-3729715 Feature type: polypeptideProtein Sequence
Length: 113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.161 | 1.029 | 1.448 | 0.0 | 1.622 | 0.227 | 1.475 | 0.0 | 0.787 | 0.837 | 1.609 | 2.603 | 0.492 | 0.851 | 0.0 | 0.506 | 0.58 | 0.939 | 0.0 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2743
|
— | — |
1.333
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_6833
|
— |
5-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.281
|
0.362
|
0.170
|
0.524
|
0.253
|
0.350
|
0.242
|
0.014
|
0.241
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000782
|
2.000
|
4.000
|
Hsc_gene_13558.t1;Hsc_gene_6833.t1;Hsc_gene_9212.t1;Hsc_gene_9212.t2
|
Hsc_gene_13558.t1;Hsc_gene_6833.t1;Hsc_gene_9212.t1;Hsc_gene_9212.t2
|
— |
O61463.1 Large ribosomal subunit protein P2 [Cryptochiton stelleri]
|
KAI1711135.1 60s acidic ribosomal protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002182|GO:0003735|GO:0005840|GO:0006414|GO:0022625
|
GO:0005575_0.869|GO:0110165_0.860|GO:0005622_0.747|GO:0005737_0.673|GO:0043226_0.651|GO:0003674_0.638|GO:0043229_0.637|GO:0008150_0.603|GO:0005829_0.556|GO:0043228_0.532|GO:0043232_0.532|GO:0009987_0.503
|
IPR027534+2-113+|IPR038716+1-59+|IPR044076+1-113+
|
— |
PF00428+18-112+60s_Acidic_ribosomal_protein
|
G3DSA:1.10.10.1410:FF:000002+1-59+60S_acidic_ribosomal_protein_P2
|
PTHR21141+1-113+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
59-113
|
1.000
|
1-58
|
4v7e_Ct
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
11455.870
|
4.207
|
-8.000
|
28.319
|
3.540
|
40.708
|
59.292
|
10.619
|
17.699
|
61.062
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
2153.264
|
604.224
|
990.968
|
1599.579
|
1738.703
|
1624.324
|
707.741
|
692.307
|
6866.009
|
1286.831
|
3677.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.483
|
1.267
|
0.801
|
— | — |
-1.191
|
-1.336
|
— | — | — | — |
-6.622
|
-3.012
|
No JSON data available for plots.