Hg_chrom2_TN10mRNA_2878
Organism: Heterodera glycines Gene Locus: chr2:3732513-3736354 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.661 | 1.11 | 0.579 | 1.567 | 1.023 | 0.874 | 0.487 | 1.023 | 1.465 | 1.321 | 1.136 | 2.005 | 1.894 | 0.962 | 0.928 | 1.299 | 0.745 | 0.861 | 0.0 | 0.936 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2744
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
6-46
|
0.957
|
— | — |
0.000
|
— | — |
0.753
|
0.126
|
0.016
|
0.450
|
0.034
|
0.035
|
0.055
|
0.008
|
0.077
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003247
|
2.000
|
1.000
|
Hsc_gene_9210.t1
|
Hsc_gene_9210.t1
|
— |
O62389.2 Nuclear hormone receptor family member nhr-61 [Caenorhabditis elegans]
|
CAD2179813.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.890|GO:0005575_0.743|GO:0110165_0.738|GO:0005622_0.680|GO:0050896_0.676|GO:0009987_0.666|GO:0065007_0.648|GO:0043226_0.645|GO:0050789_0.637|GO:0003674_0.635|GO:0043229_0.635|GO:0050794_0.585|GO:0016020_0.562|GO:0005488_0.543|GO:0008152_0.509
|
IPR000536+196-426_228-397_230-404+|IPR001628+11-79_11-83_13-77_29-44_60-68_68-76+|IPR013088+5-107+|IPR035500+229-419_229-423+|IPR050274+8-403+
|
SM00399+11-79+|SM00430+228-397+
|
PF00104+230-404+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+13-77+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24083+8-403+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-440
|
1hcq_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
49823.200
|
8.551
|
16.500
|
23.409
|
12.045
|
45.227
|
54.773
|
14.091
|
9.318
|
46.591
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
115.926
|
21.157
|
102.557
|
40.358
|
10.324
|
4.779
|
3.441
|
48.362
|
435.119
|
94.220
|
240.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.050
|
0.795
|
-1.237
|
-1.999
|
-1.097
|
— |
3.240
|
-3.679
|
— |
-3.289
|
— | — | — |
No JSON data available for plots.