Hg_chrom2_TN10mRNA_2880
Organism: Heterodera glycines Gene Locus: chr2:3762521-3765749 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.864 | 0.71 | 1.249 | 0.0 | 1.654 | 0.587 | 1.272 | 0.0 | 1.357 | 0.825 | 1.851 | 2.694 | 0.636 | 0.881 | 0.156 | 0.436 | 0.501 | 1.041 | 0.0 | 0.449 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2746
|
— | — |
1.333
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_6833
|
— |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.262
|
0.376
|
0.221
|
0.538
|
0.166
|
0.239
|
0.322
|
0.009
|
0.195
|
0.641
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000782
|
2.000
|
4.000
|
Hsc_gene_13558.t1;Hsc_gene_6833.t1;Hsc_gene_9212.t1;Hsc_gene_9212.t2
|
Hsc_gene_13558.t1;Hsc_gene_6833.t1;Hsc_gene_9212.t1;Hsc_gene_9212.t2
|
— |
O61463.1 Large ribosomal subunit protein P2 [Cryptochiton stelleri]
|
KAI1711135.1 60s acidic ribosomal protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002182|GO:0003735|GO:0005840|GO:0006414|GO:0022625
|
GO:0005575_0.858|GO:0110165_0.847|GO:0005622_0.749|GO:0005737_0.692|GO:0003674_0.658|GO:0043226_0.650|GO:0043229_0.636|GO:0008150_0.599|GO:0005829_0.579|GO:0043228_0.535|GO:0043232_0.535|GO:0009987_0.503
|
IPR027534+20-131+|IPR038716+18-77+|IPR044076+19-131+
|
— |
PF00428+36-130+60s_Acidic_ribosomal_protein
|
G3DSA:1.10.10.1410:FF:000002+16-77+60S_acidic_ribosomal_protein_P2
|
PTHR21141+19-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-131
|
1.000
|
1-87
|
4v7e_Ct
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
13664.690
|
4.567
|
-5.000
|
29.771
|
3.817
|
41.221
|
58.779
|
12.977
|
16.794
|
54.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
2388.903
|
667.961
|
1172.155
|
1767.679
|
1797.615
|
1511.241
|
713.644
|
381.986
|
5833.110
|
3072.012
|
4255.340
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
1.267
|
0.701
|
— |
-0.235
|
-1.075
|
-2.093
|
1.043
|
— |
-1.544
|
— | — | — |
No JSON data available for plots.