Hg_chrom2_TN10mRNA_2887
Organism: Heterodera glycines Gene Locus: chr2:3830453-3832063 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.573 | 1.685 | 0.369 | 0.8 | 0.386 | 1.486 | 0.276 | 0.87 | 2.705 | 1.723 | 0.659 | 1.876 | 2.093 | 0.613 | 0.828 | 0.994 | 0.808 | 1.142 | 1.115 | 0.938 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2753
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
30-103
|
0.948
|
— | — | — | — |
0.000
|
— | — |
0.062
|
0.088
|
0.014
|
0.073
|
0.300
|
0.203
|
0.194
|
0.042
|
0.738
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000528
|
4.000
|
3.000
|
Hsc_gene_21495.t1;Hsc_gene_9247.t1;Hsc_gene_9250.t1
|
— | — | — |
KAI1706127.1 serpentine type 7TM GPCR chemoreceptor srd domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
— |
IPR017452+20-295+|IPR019428+11-306+
|
— |
PF10326+11-306+Serpentine_type_7TM_GPCR_chemoreceptor_Str
|
— |
PTHR22943+14-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
39875.530
|
9.834
|
17.000
|
14.493
|
13.913
|
39.420
|
60.580
|
10.145
|
4.348
|
41.449
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
246.732
|
1.459
|
5.412
|
1.651
|
1.851
|
1.015
|
1.117
|
1.898
|
0.000
|
1074.053
|
613.745
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.654
|
— |
-1.602
|
— | — | — | — | — |
-10.874
|
— |
-9.027
|
— | — |
No JSON data available for plots.