Hg_chrom2_TN10mRNA_2888
Organism: Heterodera glycines Gene Locus: chr2:3835450-3844421 Feature type: polypeptideProtein Sequence
Length: 613
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.328 | 0.759 | 0.949 | 0.675 | 1.359 | 1.631 | 1.165 | 1.223 | 0.834 | 0.882 | 0.47 | 0.864 | 0.816 | 0.69 | 1.565 | 1.212 | 0.802 | 0.791 | 1.129 | 0.672 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2754
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.843
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPKKRRS,RRKYVDRAGRRRRAV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.877
|
0.085
|
0.006
|
0.279
|
0.034
|
0.022
|
0.039
|
0.009
|
0.045
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003248
|
2.000
|
1.000
|
Hsc_gene_9237.t1
|
Hsc_gene_9237.t1
|
— |
Q7TN31.1 Angiogenic factor with G patch and FHA domains 1 [Mus musculus]
|
KAI1728805.1 g-patch domain-containing protein [Ditylenchus destructor]
|
No
|
-0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0008150_0.775|GO:0005575_0.749|GO:0110165_0.736|GO:0009987_0.711|GO:0005622_0.659|GO:0065007_0.602|GO:0050789_0.593|GO:0050794_0.587|GO:0043226_0.521|GO:0016020_0.516|GO:0003674_0.509|GO:0043229_0.509
|
IPR000467+524-570_526-572_527-569+|IPR041591+60-106+|IPR053027+26-291+
|
SM00443+524-570+
|
PF01585+527-569+G-patch_domain|PF17780+60-106+OCRE_domain
|
— |
PTHR23106+26-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
197-262;548-613
|
2.000
|
1-196;263-547
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.623
|
66694.700
|
5.537
|
-8.500
|
26.591
|
9.135
|
49.592
|
50.408
|
13.214
|
13.377
|
53.834
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1063.679
|
718.857
|
587.223
|
467.971
|
495.457
|
387.396
|
461.610
|
328.216
|
280.490
|
3150.703
|
1920.612
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.522
|
-0.756
|
-0.218
|
— |
-0.340
|
0.262
|
-0.344
|
0.633
|
-3.604
|
— | — | — | — |
No JSON data available for plots.