Hg_chrom2_TN10mRNA_2898
Organism: Heterodera glycines Gene Locus: chr2:3894338-3902822 Feature type: polypeptideProtein Sequence
Length: 685
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.086 | 0.781 | 0.557 | 0.856 | 0.56 | 0.936 | 0.921 | 0.584 | 1.946 | 1.401 | 0.818 | 1.632 | 1.825 | 0.758 | 0.864 | 1.126 | 0.862 | 0.951 | 1.572 | 0.687 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2764
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKKCCGDGGDKFRKKMD
|
— | — |
29-63
|
0.986
|
— | — |
0.000
|
— | — |
0.153
|
0.230
|
0.021
|
0.202
|
0.161
|
0.409
|
0.301
|
0.025
|
0.716
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003251
|
2.000
|
1.000
|
Hsc_gene_9251.t1
|
Hsc_gene_9251.t1
|
— |
Q21455.3 Proton myo-inositol cotransporter hmit-1.3 [Caenorhabditis elegans]
|
KAI1709457.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0005575_0.828|GO:0110165_0.824|GO:0016020_0.788|GO:0008150_0.785|GO:0071944_0.734|GO:0005886_0.715|GO:0009987_0.703|GO:0003674_0.686|GO:0006810_0.660|GO:0051179_0.660|GO:0051234_0.660|GO:0055085_0.647|GO:0005215_0.591|GO:0022857_0.591
|
IPR003663+110-457_127-137_213-232_380-390_558-579_581-593+|IPR005828+119-463_551-657+|IPR005829+176-193_218-243+|IPR020846+119-646+|IPR036259+108-654_109-473_538-669+|IPR050814+107-664+
|
— |
PF00083+119-463_551-657+Sugar_(and_other)_transporter
|
— |
PTHR48020+107-664+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-685
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
75311.500
|
9.542
|
26.000
|
17.226
|
12.117
|
37.372
|
62.628
|
10.803
|
6.423
|
49.343
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
148.452
|
21.709
|
87.158
|
122.782
|
129.842
|
432.726
|
172.539
|
361.544
|
36.724
|
123.824
|
86.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.776
|
2.362
|
0.603
|
— |
1.752
|
-1.323
|
— |
-0.929
|
— | — | — | — | — |
No JSON data available for plots.