Hg_chrom2_TN10mRNA_2900
Organism: Heterodera glycines Gene Locus: chr2:3911345-3912771 Feature type: polypeptideProtein Sequence
Length: 270
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.689 | 1.637 | 0.673 | 0.894 | 0.802 | 1.519 | 0.794 | 1.296 | 2.222 | 1.652 | 1.122 | 1.961 | 2.469 | 0.356 | 0.831 | 0.952 | 0.304 | 0.393 | 0.57 | 0.327 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2766
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
lysosome_vacuole
|
nucleus
|
RKKR
|
— | — | — | — | — |
0.515
|
0.362
|
2.000
|
— |
0.410
|
0.194
|
0.022
|
0.255
|
0.402
|
0.446
|
0.260
|
0.067
|
0.267
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006679
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAI3413166.1 hypothetical protein GPALN_016349 [Globodera pallida]
|
CAE7508265
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-270
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
30810.100
|
9.289
|
11.500
|
22.593
|
13.333
|
44.074
|
55.926
|
14.074
|
8.519
|
38.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
101.137
|
0.760
|
1.618
|
78.918
|
24.659
|
4.426
|
0.911
|
1.246
|
39.390
|
370.730
|
228.727
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
6.552
|
5.727
|
-1.713
|
-2.464
|
-2.284
|
— | — | — | — | — | — | — |