Hg_chrom2_TN10mRNA_2902
Organism: Heterodera glycines Gene Locus: chr2:3931781-3937343 Feature type: polypeptideProtein Sequence
Length: 675
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.068 | 0.792 | 0.566 | 0.868 | 0.568 | 0.95 | 0.917 | 0.593 | 1.942 | 1.421 | 0.831 | 1.569 | 1.77 | 0.741 | 0.847 | 1.164 | 0.874 | 0.92 | 1.595 | 0.697 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2768
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKKCCGDGGDKFRKKMD
|
— | — |
29-57
|
0.908
|
— | — |
0.000
|
— | — |
0.145
|
0.225
|
0.020
|
0.199
|
0.165
|
0.406
|
0.301
|
0.024
|
0.718
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003251
|
2.000
|
1.000
|
Hsc_gene_9251.t1
|
Hsc_gene_9251.t1
|
— |
Q21455.3 Proton myo-inositol cotransporter hmit-1.3 [Caenorhabditis elegans]
|
KAI1709457.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0005575_0.861|GO:0110165_0.860|GO:0016020_0.820|GO:0008150_0.781|GO:0071944_0.764|GO:0005886_0.748|GO:0009987_0.701|GO:0003674_0.682|GO:0006810_0.650|GO:0051179_0.650|GO:0051234_0.650|GO:0055085_0.628|GO:0005215_0.570|GO:0022857_0.570
|
IPR003663+110-447_127-137_213-232_370-380_548-569_571-583+|IPR005828+119-453_541-647+|IPR005829+176-193_218-243+|IPR020846+119-636+|IPR036259+108-644_109-463_528-659+|IPR050814+107-654+
|
— |
PF00083+119-453_541-647+Sugar_(and_other)_transporter
|
— |
PTHR48020+107-654+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-675
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
74209.090
|
9.466
|
25.000
|
17.333
|
12.000
|
37.926
|
62.074
|
10.815
|
6.519
|
49.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
205.613
|
19.808
|
97.055
|
135.872
|
157.563
|
567.898
|
210.594
|
404.019
|
8.949
|
295.541
|
172.716
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.063
|
2.640
|
0.595
|
— |
1.865
|
-1.424
|
-0.600
|
-0.799
|
— | — | — | — | — |
No JSON data available for plots.