Hg_chrom2_TN10mRNA_2905
Organism: Heterodera glycines Gene Locus: chr2:3942255-3943846 Feature type: polypeptideProtein Sequence
Length: 239
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.827 | 1.46 | 1.293 | 0.144 | 0.767 | 0.429 | 0.648 | 2.092 | 1.767 | 1.244 | 1.078 | 0.984 | 1.976 | 0.885 | 0.854 | 0.897 | 0.96 | 0.951 | 1.287 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2770
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.730
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.111
|
0.255
|
0.081
|
0.286
|
0.709
|
0.406
|
0.534
|
0.044
|
0.150
|
0.389
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006682
|
1.000
|
1.000
|
Hsc_gene_9257.t1
|
Hsc_gene_9257.t1;Hsc_gene_9257.t2
|
— | — |
KAI1709427.1 methyltransferase domain-containing protein [Ditylenchus destructor]
|
WP_342346867
|
0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008757
|
GO:0005575_0.861|GO:0110165_0.861|GO:0016020_0.788|GO:0005622_0.754|GO:0005737_0.745|GO:0043226_0.711|GO:0043229_0.697|GO:0043227_0.694|GO:0043231_0.694|GO:0005829_0.591|GO:0005634_0.574
|
IPR013216+79-154+|IPR029063+60-227_107-224+
|
— |
PF08241+79-154+Methyltransferase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-239
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
26961.880
|
7.279
|
4.000
|
27.197
|
14.226
|
47.280
|
52.720
|
15.481
|
11.715
|
49.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
54.144
|
1.615
|
12.540
|
6.625
|
4.024
|
16.356
|
5.878
|
23.365
|
0.000
|
210.480
|
120.275
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.730
|
1.902
|
-0.812
|
— |
2.042
|
-1.467
|
— |
-1.847
|
— | — | — | — | — |
No JSON data available for plots.