Hg_chrom2_TN10mRNA_2906
Organism: Heterodera glycines Gene Locus: chr2:3946833-3955202 Feature type: polypeptideProtein Sequence
Length: 957
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.118 | 0.948 | 0.608 | 0.865 | 0.557 | 0.831 | 0.796 | 1.463 | 1.44 | 1.596 | 0.412 | 1.229 | 1.625 | 0.804 | 1.173 | 1.493 | 0.959 | 0.855 | 0.804 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2771
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.815
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.139
|
0.137
|
0.019
|
0.195
|
0.416
|
0.445
|
0.371
|
0.013
|
0.576
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006683
|
1.000
|
1.000
|
Hsc_gene_9258.t1
|
Hsc_gene_9258.t1;Hsc_gene_9258.t2
|
— | — |
KAI1705069.1 sulfate permease family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0055085
|
GO:0008150_0.878|GO:0005575_0.859|GO:0110165_0.859|GO:0016020_0.819|GO:0009987_0.792|GO:0071944_0.775|GO:0005886_0.756|GO:0003674_0.725|GO:0051179_0.702|GO:0006810_0.692|GO:0051234_0.692|GO:0055085_0.609|GO:0005215_0.529|GO:0022857_0.529
|
IPR001902+368-838+|IPR002645+655-839_663-835+|IPR011547+140-285_369-599+|IPR036513+633-842_660-837+
|
— |
PF00916+140-285_369-599+Sulfate_permease_family|PF01740+663-835+STAS_domain
|
— |
PTHR11814+368-838+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33;875-957
|
1.000
|
34-874
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
104574.690
|
8.727
|
31.000
|
18.077
|
12.226
|
41.693
|
58.307
|
11.390
|
6.688
|
52.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
247.338
|
173.713
|
494.752
|
225.313
|
64.266
|
55.932
|
175.768
|
249.841
|
234.362
|
366.486
|
309.861
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.280
|
0.238
|
-1.026
|
-1.841
|
— |
1.661
|
2.060
|
— | — | — | — | — | — |
No JSON data available for plots.