Hg_chrom2_TN10mRNA_2907
Organism: Heterodera glycines Gene Locus: chr2:3958139-3966751 Feature type: polypeptideProtein Sequence
Length: 874
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.985 | 1.251 | 0.957 | 0.513 | 0.858 | 0.821 | 0.736 | 0.744 | 1.526 | 1.345 | 0.763 | 1.615 | 1.971 | 0.858 | 0.864 | 1.079 | 0.713 | 0.953 | 0.968 | 1.043 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2772
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.828
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
FKRR,KKRK,KPRKR,KKRSRK
|
16-104
|
0.814
|
— | — | — | — |
0.000
|
— | — |
0.084
|
0.101
|
0.010
|
0.210
|
0.271
|
0.339
|
0.296
|
0.004
|
0.662
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006684
|
1.000
|
1.000
|
Hsc_gene_9259.t1
|
Hsc_gene_9259.t1
|
— |
Q21219.2 Peptide transporter family 1 [Caenorhabditis elegans]
|
KAI1723878.1 POT family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006857|GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.940|GO:0005575_0.891|GO:0110165_0.890|GO:0016020_0.862|GO:0009987_0.851|GO:0003674_0.847|GO:0051179_0.837|GO:0006810_0.835|GO:0051234_0.835|GO:0055085_0.756|GO:0071944_0.726|GO:0005886_0.720|GO:0005215_0.694|GO:0022857_0.694|GO:0071705_0.690|GO:0005622_0.546|GO:0042886_0.503
|
IPR000109+113-447_693-772+|IPR018456+102-126_187-199+|IPR036259+30-455_63-418_691-827+
|
— |
PF00854+113-447_693-772+POT_family
|
— |
PTHR11654+46-810+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;853-874
|
1.000
|
2-852
|
7s8u_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
97799.500
|
6.093
|
-3.500
|
21.167
|
13.387
|
41.648
|
58.352
|
10.755
|
10.412
|
49.428
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1026.198
|
424.095
|
505.355
|
545.638
|
907.333
|
3479.827
|
385.046
|
1491.540
|
244.937
|
1403.850
|
907.173
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.226
|
0.220
|
0.702
|
1.956
|
-3.168
|
-1.336
|
-1.809
|
— | — | — | — | — |
No JSON data available for plots.