Hg_chrom2_TN10mRNA_2909
Organism: Heterodera glycines Gene Locus: chr2:3974732-3979342 Feature type: polypeptideProtein Sequence
Length: 541
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.032 | 0.538 | 0.956 | 0.739 | 1.043 | 0.528 | 0.647 | 1.561 | 1.424 | 0.952 | 1.631 | 2.105 | 1.173 | 1.622 | 1.32 | 0.758 | 0.728 | 0.142 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2774
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRSHPGLFFSSVRRRPH
|
5-45
|
0.997
|
32-53
|
0.928
|
— | — |
0.000
|
— | — |
0.155
|
0.106
|
0.252
|
0.481
|
0.089
|
0.074
|
0.206
|
0.180
|
0.406
|
0.584
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000167
|
1.000
|
11.000
|
Hsc_gene_12159.t1;Hsc_gene_12159.t2;Hsc_gene_12159.t3;Hsc_gene_12159.t4;Hsc_gene_12159.t5;Hsc_gene_22589.t1;Hsc_gene_23912.t1;Hsc_gene_7118.t1;Hsc_gene_9264.t1;Hsc_gene_9265.t1;Hsc_gene_9267.t1
|
Hsc_gene_12159.t6;Hsc_gene_9261.t1;Hsc_gene_9265.t1
|
— | — |
CAD2179813.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355|GO:0008270
|
GO:0008150_0.779|GO:0050896_0.622|GO:0006950_0.547|GO:0005575_0.528|GO:0110165_0.525
|
IPR000536+298-527_329-498_333-492+|IPR001723+202-212_330-351_351-367_425-440+|IPR013088+81-220+|IPR035500+329-509_329-524+|IPR050274+169-494+
|
SM00430+329-498+
|
PF00104+333-492+Ligand-binding_domain_of_nuclear_hormone_receptor
|
— |
PTHR24083+169-494+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-541
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
61350.880
|
10.562
|
40.500
|
22.921
|
11.091
|
45.287
|
54.713
|
15.527
|
7.394
|
45.841
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
507.804
|
99.657
|
116.744
|
85.186
|
37.316
|
44.147
|
33.554
|
77.002
|
335.425
|
1784.970
|
1163.737
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.363
|
-0.347
|
-1.223
|
— | — |
0.703
|
-1.058
|
— | — |
-5.287
|
— | — |
No JSON data available for plots.