Hg_chrom2_TN10mRNA_2910
Organism: Heterodera glycines Gene Locus: chr2:3983142-3986770 Feature type: polypeptideProtein Sequence
Length: 426
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 1.201 | 0.726 | 1.295 | 0.782 | 0.722 | 0.475 | 0.939 | 1.304 | 1.459 | 1.245 | 1.381 | 1.956 | 1.129 | 1.006 | 1.308 | 0.462 | 0.889 | 0.361 | 0.759 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2775
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.527
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRSISLKKEYKCKNGRK,RKCELEKDSASCKRCRL
|
— | — |
2-43
|
0.859
|
— | — |
0.000
|
— | — |
0.792
|
0.096
|
0.024
|
0.455
|
0.033
|
0.022
|
0.037
|
0.008
|
0.088
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003249
|
2.000
|
1.000
|
Hsc_gene_9266.t1
|
Hsc_gene_9266.t1
|
— |
P41829.3 Nuclear hormone receptor family member nhr-6 [Caenorhabditis elegans]
|
CAD2172396.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.890|GO:0005575_0.737|GO:0110165_0.737|GO:0005622_0.665|GO:0009987_0.627|GO:0043226_0.617|GO:0043229_0.612|GO:0016020_0.602|GO:0065007_0.562|GO:0050789_0.551|GO:0003674_0.549|GO:0043227_0.517|GO:0043231_0.513|GO:0050896_0.512
|
IPR000536+175-412_214-383_219-377+|IPR001628+9-79_9-83_11-77_12-28_28-43_60-68_68-76+|IPR013088+4-102+|IPR035500+215-394_215-409+|IPR050274+8-382+
|
SM00399+9-79+|SM00430+214-383+
|
PF00104+219-377+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+11-77+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24083+8-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-426
|
1hcq_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
47877.990
|
9.460
|
23.000
|
23.709
|
11.972
|
43.662
|
56.338
|
15.023
|
8.685
|
48.357
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
46.068
|
22.454
|
51.724
|
19.174
|
5.856
|
5.158
|
20.298
|
23.133
|
23.152
|
128.759
|
83.499
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.974
|
— |
-1.321
|
-1.751
|
— |
1.990
|
2.066
|
— | — | — |
-4.152
|
— | — |
No JSON data available for plots.