Hg_chrom2_TN10mRNA_2912
Organism: Heterodera glycines Gene Locus: chr2:3993524-3997948 Feature type: polypeptideProtein Sequence
Length: 546
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.193 | 1.032 | 0.253 | 1.435 | 0.892 | 0.785 | 1.557 | 1.506 | 1.337 | 1.027 | 1.724 | 1.577 | 0.881 | 1.009 | 0.445 | 0.751 | 0.916 | 0.423 | 0.862 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2777
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_9268;Hsc_gene_9280
|
— |
Hg_chrom2_TN10mRNA_2912
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-28
|
— |
0.846
|
— |
0.000
|
0.525
|
0.305
|
0.073
|
0.715
|
0.164
|
0.152
|
0.108
|
0.006
|
0.106
|
0.261
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000783
|
4.000
|
2.000
|
Hsc_gene_9268.t1;Hsc_gene_9280.t1
|
Hsc_gene_9268.t1
|
— |
Q5EAC2.1 Glutathione synthetase [Bos taurus]
|
5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.941|GO:0003674_0.880|GO:0008152_0.799|GO:0009987_0.755|GO:0005575_0.692|GO:0110165_0.689|GO:0050896_0.685|GO:0003824_0.664|GO:0044237_0.647|GO:0009058_0.635|GO:0044249_0.608|GO:0006790_0.553|GO:0043603_0.551|GO:0006518_0.547|GO:0006575_0.547|GO:0006749_0.547|GO:0006750_0.547|GO:0019184_0.547|GO:0042398_0.547|GO:0043043_0.547|GO:0043604_0.547|GO:0044272_0.547|GO:0016874_0.536|GO:0004363_0.530|GO:0016879_0.530|GO:0016881_0.530|GO:1904091_0.530|GO:0005622_0.528|GO:0042221_0.508
|
IPR004887+262-369+|IPR005615+34-546_45-545_52-545+|IPR014042+121-407+|IPR014049+54-487+|IPR014709+408-475+|IPR016185+261-371+|IPR037013+240-371+
|
— |
PF03199+262-369+Eukaryotic_glutathione_synthase|PF03917+52-545+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+45-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-546
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
61933.060
|
5.967
|
-5.500
|
29.121
|
12.271
|
45.421
|
54.579
|
14.835
|
14.286
|
44.322
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
290.612
|
2.992
|
4.332
|
747.473
|
360.161
|
37.980
|
36.949
|
18.512
|
128.520
|
721.887
|
467.587
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
7.832
|
7.525
|
-1.086
|
-3.231
|
— |
-1.152
|
1.145
|
— | — | — | — | — |