Hg_chrom2_TN10mRNA_2913
Organism: Heterodera glycines Gene Locus: chr2:4004265-4005541 Feature type: polypeptideProtein Sequence
Length: 192
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.606 | 2.18 | 0.568 | 2.155 | 0.521 | 1.335 | 1.116 | 0.26 | 1.389 | 0.704 | 1.105 | 0.919 | 2.17 | 1.102 | 0.425 | 1.19 | 0.939 | 0.789 | 0.401 | 0.613 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_9270;Hsc_gene_9272;Hsc_gene_9274
|
— |
Hg_chrom2_TN10mRNA_2913
|
17-Not_Clustered
|
0.558
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.992
|
1.000
|
0.000
|
0.000
|
0.455
|
0.242
|
0.057
|
0.348
|
0.148
|
0.139
|
0.060
|
0.069
|
0.179
|
0.897
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003252
|
2.000
|
1.000
|
Hsc_gene_9272.t1
|
Hsc_gene_9272.t1;Hsc_gene_9274.t1
|
— | — |
QEU52642.1 immunosuppressive effector protein [Heterodera glycines];QOL71370.1 effector protein [Heterodera glycines]
|
WP_114750308
|
0.950
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-192
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
20844.800
|
8.356
|
6.500
|
16.146
|
10.938
|
44.792
|
55.208
|
9.896
|
6.250
|
58.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
3070.222
|
0.610
|
1250.801
|
1832.778
|
254.688
|
19.577
|
9.118
|
829.703
|
15629.701
|
135.969
|
6776.140
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10.776
|
11.410
|
0.655
|
-2.880
|
-3.686
|
-1.101
|
5.309
|
-6.375
|
6.732
|
-2.938
|
— | — | — |