Hg_chrom2_TN10mRNA_2914
Organism: Heterodera glycines Gene Locus: chr2:4007828-4009061 Feature type: polypeptideProtein Sequence
Length: 192
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 2.422 | 0.947 | 1.796 | 0.521 | 1.068 | 0.992 | 0.26 | 1.273 | 0.985 | 0.71 | 1.225 | 1.736 | 1.502 | 0.319 | 1.19 | 1.025 | 0.631 | 1.202 | 0.46 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2779
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
20E03|AF490251.1#tn22jg20182.t1
|
20E03|AF4902511#tn22jg20182t1
|
— | — |
Hg_chrom2_TN10mRNA_2914
|
17-Not_Clustered
|
0.452
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.986
|
1.000
|
0.000
|
0.000
|
0.433
|
0.245
|
0.061
|
0.355
|
0.176
|
0.132
|
0.049
|
0.019
|
0.198
|
0.842
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003252
|
2.000
|
1.000
|
Hsc_gene_9272.t1
|
— | — | — |
AAO85459.1 putative gland protein G20E03 [Heterodera glycines]
|
MBR4565984
|
0.550
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-192
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
20760.440
|
4.631
|
-3.500
|
15.104
|
9.896
|
44.271
|
55.729
|
6.771
|
8.333
|
61.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
2779.297
|
2.588
|
1163.305
|
2693.825
|
365.077
|
15.331
|
18.660
|
1005.540
|
13231.043
|
262.019
|
5820.172
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.587
|
9.879
|
1.315
|
-2.916
|
-4.559
|
— |
5.933
|
-5.610
|
5.549
|
-2.120
|
— | — | — |