Hg_chrom2_TN10mRNA_2915
Organism: Heterodera glycines Gene Locus: chr2:4015365-4020210 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.365 | 0.546 | 0.768 | 0.648 | 0.782 | 0.963 | 1.174 | 0.939 | 0.835 | 1.523 | 0.925 | 1.381 | 1.565 | 0.903 | 1.054 | 0.537 | 0.616 | 1.209 | 1.445 | 0.967 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2780
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2915
|
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion|endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.143
|
0.691
|
0.206
|
0.251
|
0.670
|
0.202
|
0.215
|
0.017
|
0.111
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006685
|
1.000
|
1.000
|
Hsc_gene_9279.t1
|
Hsc_gene_9279.t1
|
— |
A0JPD7.1 Peroxiredoxin-like 2A [Xenopus tropicalis]
|
KAI1718366.1 ahpC/TSA antioxidant enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.872|GO:0110165_0.866|GO:0005622_0.713|GO:0005737_0.708|GO:0008150_0.622|GO:0003674_0.592|GO:0009987_0.556|GO:0016020_0.548|GO:0043226_0.502
|
IPR032801+49-211_94-195+|IPR036249+52-194+
|
— |
PF13911+94-195+AhpC/TSA_antioxidant_enzyme
|
— |
PTHR28630+49-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-213
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
23353.190
|
9.083
|
7.000
|
22.066
|
12.676
|
35.681
|
64.319
|
13.146
|
8.920
|
50.235
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
563.315
|
2474.101
|
499.515
|
334.928
|
319.692
|
162.193
|
253.123
|
407.656
|
507.273
|
414.847
|
454.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.539
|
-3.022
|
-0.467
|
— |
-0.965
|
0.653
|
1.226
|
-0.545
|
— | — | — | — | — |
No JSON data available for plots.