Hg_chrom2_TN10mRNA_2916
Organism: Heterodera glycines Gene Locus: chr2:4022886-4027368 Feature type: polypeptideProtein Sequence
Length: 540
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.883 | 1.206 | 1.077 | 0.319 | 1.358 | 0.855 | 0.816 | 1.481 | 1.44 | 1.376 | 0.954 | 1.743 | 1.595 | 0.926 | 0.945 | 0.503 | 0.729 | 0.926 | 0.427 | 0.98 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2781
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_9268;Hsc_gene_9280
|
— |
Hg_chrom2_TN10mRNA_2916
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-22
|
0.922
|
1.000
|
0.000
|
0.000
|
0.533
|
0.240
|
0.083
|
0.704
|
0.136
|
0.186
|
0.100
|
0.006
|
0.118
|
0.224
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000783
|
4.000
|
2.000
|
Hsc_gene_9268.t1;Hsc_gene_9280.t1
|
Hsc_gene_9268.t1;Hsc_gene_9280.t1
|
— |
Q5EAC2.1 Glutathione synthetase [Bos taurus]
|
5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.941|GO:0003674_0.875|GO:0008152_0.800|GO:0009987_0.752|GO:0005575_0.687|GO:0050896_0.684|GO:0110165_0.683|GO:0003824_0.656|GO:0044237_0.645|GO:0009058_0.634|GO:0044249_0.606|GO:0006790_0.551|GO:0043603_0.549|GO:0006518_0.544|GO:0006575_0.544|GO:0006749_0.544|GO:0006750_0.544|GO:0019184_0.544|GO:0042398_0.544|GO:0043043_0.544|GO:0043604_0.544|GO:0044272_0.544|GO:0016874_0.534|GO:0004363_0.528|GO:0016879_0.528|GO:0016881_0.528|GO:1904091_0.528|GO:0005622_0.521|GO:0042221_0.509
|
IPR004887+257-363+|IPR005615+28-540_39-539_46-539+|IPR014042+115-401+|IPR014049+48-481+|IPR014709+402-469+|IPR016185+255-365+|IPR037013+234-365+
|
— |
PF03199+257-363+Eukaryotic_glutathione_synthase|PF03917+46-539+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+39-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-540
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
61100.030
|
5.501
|
-9.000
|
27.963
|
12.593
|
44.444
|
55.556
|
13.889
|
14.074
|
45.370
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
961.191
|
33.297
|
40.538
|
1976.865
|
836.519
|
103.711
|
84.695
|
45.713
|
771.032
|
2456.436
|
1734.120
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.753
|
5.723
|
-1.272
|
-2.996
|
— |
-1.301
|
1.036
|
— | — | — | — | — |