Hg_chrom2_TN10mRNA_2918
Organism: Heterodera glycines Gene Locus: chr2:4039337-4044776 Feature type: polypeptideProtein Sequence
Length: 460
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.48 | 1.618 | 0.988 | 0.6 | 1.522 | 1.338 | 0.595 | 1.848 | 1.401 | 1.234 | 1.68 | 1.151 | 0.966 | 0.251 | 1.109 | 1.025 | 0.82 | 0.659 | 0.836 | 0.703 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2783
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_9281
|
Hg_chrom2_TN10mRNA_2918
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
RRKR,RRRK,KRKKK,KKSKKSCCFKFSTKTKSK,RRKNWHYQQKQENEREKCK,RKNWHYQQKQENEREKCKR,RGKGQKKGGNRRISARKLSK
|
— | — | — | — |
1-19
|
0.966
|
1.000
|
0.000
|
0.000
|
0.364
|
0.136
|
0.023
|
0.297
|
0.455
|
0.275
|
0.402
|
0.079
|
0.279
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001805
|
2.000
|
2.000
|
Hsc_gene_9281.t1;Hsc_gene_9281.t2
|
— | — | — |
KAI3416488.1 hypothetical protein GPALN_006028 [Globodera pallida]
|
WP_110269623
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
318-460
|
1.000
|
1-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
53365.530
|
9.055
|
17.500
|
34.783
|
10.652
|
59.130
|
40.870
|
20.217
|
14.565
|
41.087
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1157.384
|
1.220
|
143.361
|
145.194
|
39.316
|
6.566
|
6.887
|
9.133
|
5397.014
|
883.916
|
2818.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.653
|
6.760
|
— |
-1.914
|
-2.569
|
— | — | — |
2.514
|
-5.062
|
-4.369
|
— | — |