Hg_chrom2_TN10mRNA_2919
Organism: Heterodera glycines Gene Locus: chr2:4039337-4044776 Feature type: polypeptideProtein Sequence
Length: 442
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.421 | 1.684 | 1.028 | 0.546 | 1.546 | 1.392 | 0.593 | 1.81 | 1.458 | 1.284 | 1.611 | 1.198 | 1.006 | 0.261 | 1.154 | 0.97 | 0.742 | 0.651 | 0.87 | 0.732 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2783
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2919
|
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
RRKR,RRRK,KRKKK,RRKNWHYQQKQENEREKCK,RKNWHYQQKQENEREKCKR,RGKGQKKGGNRRISARKLSK
|
— | — | — | — |
1-19
|
0.966
|
1.000
|
0.000
|
0.000
|
0.344
|
0.139
|
0.022
|
0.249
|
0.507
|
0.292
|
0.419
|
0.090
|
0.238
|
0.271
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001805
|
2.000
|
2.000
|
Hsc_gene_9281.t1;Hsc_gene_9281.t2
|
— | — | — |
KAI3416488.1 hypothetical protein GPALN_006028 [Globodera pallida]
|
WP_110269623
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
301-442
|
1.000
|
1-300
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
51549.470
|
8.712
|
14.000
|
34.842
|
10.860
|
58.824
|
41.176
|
19.910
|
14.932
|
40.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1157.384
|
1.220
|
143.361
|
145.194
|
39.316
|
6.566
|
6.887
|
9.133
|
5397.014
|
883.916
|
2818.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.653
|
6.760
|
— |
-1.914
|
-2.569
|
— | — | — |
2.514
|
-5.062
|
-4.369
|
— | — |