Hg_chrom2_TN10mRNA_2920
Organism: Heterodera glycines Gene Locus: chr2:4047060-4048484 Feature type: polypeptideProtein Sequence
Length: 175
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.532 | 1.329 | 0.727 | 0.591 | 1.143 | 1.319 | 0.272 | 1.429 | 1.905 | 0.927 | 2.078 | 0.672 | 2.857 | 0.659 | 0.466 | 0.816 | 0.656 | 1.039 | 1.319 | 0.672 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2784
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2920
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RKNEKKAQKAKKQ,KKQIEELLEARKNEKKAQK
|
— | — | — | — |
1-21
|
0.931
|
1.000
|
0.000
|
0.000
|
0.484
|
0.494
|
0.037
|
0.574
|
0.167
|
0.188
|
0.277
|
0.006
|
0.175
|
0.342
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006686
|
1.000
|
1.000
|
Hsc_gene_9283.t1
|
Hsc_gene_9283.t1
|
— | — |
KAI3408518.1 hypothetical protein GPALN_010137 [Globodera pallida]
|
WP_128991095
|
0.580
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR042266+32-175+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
165-175
|
1.000
|
1-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
20689.140
|
10.003
|
11.500
|
29.714
|
17.143
|
50.286
|
49.714
|
18.857
|
10.857
|
38.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
212.478
|
0.928
|
29.672
|
71.909
|
38.221
|
3.003
|
4.646
|
1.666
|
409.693
|
566.053
|
499.042
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.780
|
6.152
|
1.389
|
-0.945
|
-3.653
|
— | — | — | — | — |
-3.805
|
— | — |